gene|fish

May 13

[video]

May 12

[video]

May 11

(Source: zombietriangless)

May 10

hanspetermeyer:

It’s #shellfish break time in Canada’s #oyster capital … #localfood (at Fanny Bay, BC)

hanspetermeyer:

It’s #shellfish break time in Canada’s #oyster capital … #localfood (at Fanny Bay, BC)

Mac’s May Goals

This month I am revising my MBDbs-seq data from C. gigas gill tissue.  We’ve mapped the bisulfite reads to the WHOLE darn genome and so now I’m in the process of characterizing what regions of the genome are methylated in the gill tissue.  Beyond that I am working on finding the best way to visualize and analyze the relationships between methylation within genes (where most of the methylation is found) and different attributes of these genes including length, number of exons, expression levels etc.  Since the reads have been mapped to the WHOLE darn genome, this is the most comprehensive analysis to date and will hopefully find itself written up and submitted as a manuscript.  My goal for the end of May is to have beautiful figures ready for this paper.

I am still waiting for data from Nanostring and will also be isolating DNA/RNA from the EE2 exposures for MBD-ChIP analysis. 

May 09

jojostoast:

Oyster with cilantro blossom, mustard green and Meyer lemon.

jojostoast:

Oyster with cilantro blossom, mustard green and Meyer lemon.

Next Week: SAFS Picnic Dunk Booth

We’re only a week away from this year’s SAFS Spring Picnic, featuring the “Ultimate Peer Review” live dunk booth fundraiser.  You answered the call and the nominations poured in, so here are your Top 10 Dunkees that will take the plunge to support student travel!
Julia Parrish
Andre Punt
Tim Essington
Carolyn Friedman
Kristian Haapa-Aho
Lorenz Hauser
Steven Roberts
Daniel Schindler
Emily Davis
Charlie Waters
Dunkees will stand before the SAFS community at 5pm on Friday, May 17, 2013 to be auctioned off to the highest bidder on the SAFS lawn. Our very own Adam Hansen of the Beauchamp lab will serve as our hilarious auctioneer. All proceeds will go to the Fish Interdisciplinary Network of Students (FINS) to support student travel grants.  So be sure to bring some cash and a festive spirit if you really want to see them take a bath!
Hope to see you there and please spread the word to deep-pocketed colleagues and former students to join in the fun!

May 08

Vertical Farming in South Carolina?

agritecture:

image

Vertical farming in South Carolina? Dan Hutcherson envisions a vertical farm and aquaculture building in Greenville.

image

imageimageimage

May 07

jtotheizzoe:

You’re looking at a brain. But not really.
Connectograms are an intersection of data, neuroscience, design and art. This represents the inter-brain-region connections of 110 right-handed men, with various color codes indicated to show how strong those connections are in various ways. The Wikipedia page can decode the regions around the edge for you.
Studying the wiring of the brain is essential to understanding it. But it is not sufficient to understand it. We love to share beautiful images of brain mapping studies (I do it all the time), but relying on mapping alone is like clicking through Google Maps and saying you’ve been to Paris. 
There’s just something missing, right? And that something is us. Except that we must be in there, because we can’t exist outside of that. But why can’t we distill our “us-ness” from the map of all the pieces?
But does this map show you a brain? Does it show you a person? What’s the difference?

jtotheizzoe:

You’re looking at a brain. But not really.

Connectograms are an intersection of data, neuroscience, design and art. This represents the inter-brain-region connections of 110 right-handed men, with various color codes indicated to show how strong those connections are in various ways. The Wikipedia page can decode the regions around the edge for you.

Studying the wiring of the brain is essential to understanding it. But it is not sufficient to understand it. We love to share beautiful images of brain mapping studies (I do it all the time), but relying on mapping alone is like clicking through Google Maps and saying you’ve been to Paris. 

There’s just something missing, right? And that something is us. Except that we must be in there, because we can’t exist outside of that. But why can’t we distill our “us-ness” from the map of all the pieces?

But does this map show you a brain? Does it show you a person? What’s the difference?

Scholar Alert: New citation

Scholar Alert: New citations to my articles

Effects of the dinoflagellate< i> Alexandrium minutum</i> and its toxin (saxitoxin) on the functional activity and gene expression of< i> Crassostrea gigas</i> …

DF Mello, PM Silva, MA Barracco, P Soudant… - Harmful Algae, 2013
Abstract Blood cells or hemocytes are the major component of the cellular immune
responses in bivalves. Recent evidences have demonstrated that the immune functions of
these cells can be impaired by harmful algae and their toxins. In this study, we compared

New SNPs for population genetic analysis reveal possible cryptic speciation of eastern Australian sea mullet (Mugil cephalus)

NC Krück, DI Innes, JR Ovenden - Molecular Ecology Resources, 2013
Abstract Sustainable management of sea mullet (Mugil cephalus) fisheries needs to account
for recent observations of regional-scale differentiation. Population genetic analysis is
sought to assess the situation of this ecologically and economically important fish species


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May 06

A comparison: Growth and Genes in two species

A Capstone Research paper from years past.

Fulkerson capstone paper



via Tidal Cycles - oystergen.es http://oystergen.es/blog/2013/4/12/a-comparison-growth-and-genes-in-two-species

May 05

Are they opening?




via Tidal Cycles - oystergen.es http://bit.ly/YfMB3F

[video]

May 04

Oyster Hisotology


​Day 7 Histology from Estrogen Exposure Trial



via Tidal Cycles - oystergen.es http://bit.ly/Y8uHQl