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Genetic and epigenetic variation in mass selection populations of Pacific oyster Crassostrea gigas
Q Jiang, Q Li, H Yu, LF Kong - Genes & Genomics
Abstract Selective breeding often produces an improvement in phenotype. Much of the
phenotypic change within a species is a consequence of genetic variation. However, there is
growing evidence for phenotypic change even in the absence of DNA sequence …
phenotypic change within a species is a consequence of genetic variation. However, there is
growing evidence for phenotypic change even in the absence of DNA sequence …
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A resource of genomeâwide singleânucleotide polymorphisms generated by RAD tag sequencing in the critically endangered European eel
JM Pujolar, MW Jacobsen, J Frydenberg, TD Als… - Molecular Ecology …, 2013
Abstract Reduced representation genome sequencing such as restriction-site-associated
DNA (RAD) sequencing is finding increased use to identify and genotype large numbers of
single-nucleotide polymorphisms (SNPs) in model and nonmodel species. We generated …
DNA (RAD) sequencing is finding increased use to identify and genotype large numbers of
single-nucleotide polymorphisms (SNPs) in model and nonmodel species. We generated …
Efficient isolation of polymorphic microsatellites from high-throughput sequence data based on number of repeats
SD Cardoso, D Gonçalves, JI Robalo, VC Almada… - Marine Genomics, 2013
Abstract Transcriptome data are a good resource to develop microsatellites due to their
potential in targeting candidate genes. However, developing microsatellites can be a time-
consuming enterprise due to the numerous primer pairs to be tested. Therefore, the use of …
potential in targeting candidate genes. However, developing microsatellites can be a time-
consuming enterprise due to the numerous primer pairs to be tested. Therefore, the use of …
Immunological responses of the mangrove oysters< i> Crassostrea gasar</i> naturally infected by< i> Perkinsus</i> sp. in the Mamanguape Estuary, ParaÃba State ( …
FR Queiroga, LF Marques-Santos, H Hégaret… - Fish & Shellfish Immunology, 2013
Abstract Perkinsus genus includes protozoan parasites of marine mollusks, especially
bivalves. In the last four years, this parasite has been detected in mangrove oysters
Crassostrea rhizophorae and C. gasar from the Northeastern region of Brazil. Hemocytes …
bivalves. In the last four years, this parasite has been detected in mangrove oysters
Crassostrea rhizophorae and C. gasar from the Northeastern region of Brazil. Hemocytes …
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Effects of the dinoflagellate< i> Alexandrium minutum</i> and its toxin (saxitoxin) on the functional activity and gene expression of< i> Crassostrea gigas</i> …
DF Mello, PM Silva, MA Barracco, P Soudant… - Harmful Algae, 2013
Abstract Blood cells or hemocytes are the major component of the cellular immune
responses in bivalves. Recent evidences have demonstrated that the immune functions of
these cells can be impaired by harmful algae and their toxins. In this study, we compared …
responses in bivalves. Recent evidences have demonstrated that the immune functions of
these cells can be impaired by harmful algae and their toxins. In this study, we compared …
New SNPs for population genetic analysis reveal possible cryptic speciation of eastern Australian sea mullet (Mugil cephalus)
NC Krück, DI Innes, JR Ovenden - Molecular Ecology Resources, 2013
Abstract Sustainable management of sea mullet (Mugil cephalus) fisheries needs to account
for recent observations of regional-scale differentiation. Population genetic analysis is
sought to assess the situation of this ecologically and economically important fish species …
for recent observations of regional-scale differentiation. Population genetic analysis is
sought to assess the situation of this ecologically and economically important fish species …
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In vitro indeterminate teleost myogenesis appears to be dependent on Pax3
JM Froehlich, NJ Galt, MJ Charging, BM Meyer… - In Vitro Cellular & …, 2013
Abstract The zebrafish (Danio rerio) has been used extensively as a model system for
developmental studies but, unlike most teleost fish, it grows in a determinate-like manner. A
close relative, the giant danio (Devario cf. aequipinnatus), grows indeterminately, …
developmental studies but, unlike most teleost fish, it grows in a determinate-like manner. A
close relative, the giant danio (Devario cf. aequipinnatus), grows indeterminately, …
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[PDF] Relatedness within and among sperm whale (Physeter macrocephalus) social units assessed using single nucleotide polymorphisms
W Beslin - 2013
Altruistic behavior, such as caring for the offspring of others, is an intriguing phenomenon
observed in several mammalian species. One of the most successful theories for explaining
how this behavior could have evolved is kin selection. According to this theory, altruism …
observed in several mammalian species. One of the most successful theories for explaining
how this behavior could have evolved is kin selection. According to this theory, altruism …
Temporal dynamics and plasticity in the cellular immune response of the sea fan coral, Gorgonia ventalina
CS Couch, E Weil, CD Harvell - Marine Biology
Abstract The temporal dynamics of the invertebrate immune response often determines an
organism’s success in responding to physiological stress, physical damage, and pathogens.
To date, most immune challenge studies have been conducted under highly controlled …
organism’s success in responding to physiological stress, physical damage, and pathogens.
To date, most immune challenge studies have been conducted under highly controlled …
Impacts of ocean acidification on marine shelled molluscs
F Gazeau, LM Parker, S Comeau, JP Gattuso… - Marine Biology
Abstract Over the next century, elevated quantities of atmospheric CO 2 are expected to
penetrate into the oceans, causing a reduction in pH (â 0.3/â 0.4 pH unit in the surface
ocean) and in the concentration of carbonate ions (so-called ocean acidification). Of …
penetrate into the oceans, causing a reduction in pH (â 0.3/â 0.4 pH unit in the surface
ocean) and in the concentration of carbonate ions (so-called ocean acidification). Of …
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[PDF] Improved conversion rates for SNP genotyping of nonmodel organisms
D Conklin, I Montes, A Albaina, A Estonba
Abstract. Single nucleotide polymorphisms (SNPs) are the most abundant form of genetic
variation and are highly adaptable to large-scale automated genotyping and population
genetics studies. For nonmodel organisms, many SNP discovery projects are based on …
variation and are highly adaptable to large-scale automated genotyping and population
genetics studies. For nonmodel organisms, many SNP discovery projects are based on …
Direct and indirect effects of a new disease of alcyonacean soft corals
M Slattery, DA Renegar, DJ Gochfeld - Coral Reefs
Abstract Alcyonacean soft corals form major components of the biomass and biodiversity on
many shallow Indo-Pacific reefs. In spite of the observed increase in marine diseases
worldwide, disease has rarely been reported from this taxonomic group. Here, we …
many shallow Indo-Pacific reefs. In spite of the observed increase in marine diseases
worldwide, disease has rarely been reported from this taxonomic group. Here, we …
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[PDF] Predicting the Response of Molluscs to the Impact of Ocean Acidification
LM Parker, PM Ross, WA O’Connor, HO Pörtner… - Biology, 2013
Abstract: Elevations in atmospheric carbon dioxide (CO 2) are anticipated to acidify oceans
because of fundamental changes in ocean chemistry created by CO 2 absorption from the
atmosphere. Over the next century, these elevated concentrations of atmospheric CO 2 …
because of fundamental changes in ocean chemistry created by CO 2 absorption from the
atmosphere. Over the next century, these elevated concentrations of atmospheric CO 2 …
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Bacillus subtilis SC02 supplementation causes alterations of the microbial diversity in grass carp water
X Zhang, L Fu, B Deng, Q Liang, J Zheng, J Sun, H Zhu… - World Journal of Microbiology and …
Abstract This study was conducted to evaluate the effects of Bacillus subtilis SC02
supplement on water quality, microbial community diversity and structure in a grass carp
(Ctenopharyngodon idellus) culture. Our selected strain, B. subtilis SC02, significantly …
supplement on water quality, microbial community diversity and structure in a grass carp
(Ctenopharyngodon idellus) culture. Our selected strain, B. subtilis SC02, significantly …
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Biological Consequences of the Coaster Brook Trout Restoration Stocking Program in Lake Superior Tributaries within Pictured Rocks National Lakeshore
JBK Leonard, W Stott, DM Loope, PC Kusnierz… - North American Journal of …, 2013
Abstract The coaster Brook Trout Salvelinus fontinalis is a Lake Superior ecotype
representing intraspecific variation that has been impacted by habitat loss and overfishing.
Hatchery strains of Brook Trout derived from populations in Lake Superior were stocked …
representing intraspecific variation that has been impacted by habitat loss and overfishing.
Hatchery strains of Brook Trout derived from populations in Lake Superior were stocked …
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The easy road to genomeâwide medium density SNP screening in a nonâmodel species: development and application of a 10 K SNPâchip for the house sparrow ( …
IJ Hagen, AM Billing, B Rønning, SA Pedersen, H Pärn… - Molecular Ecology …, 2013
Abstract With the advent of next generation sequencing, new avenues have opened to study
genomics in wild populations of non-model species. Here, we describe a successful
approach to a genome-wide medium density Single Nucleotide Polymorphism (SNP) …
genomics in wild populations of non-model species. Here, we describe a successful
approach to a genome-wide medium density Single Nucleotide Polymorphism (SNP) …
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A Review of Current State of Knowledge Concerning Perkinsus marinus Effects on Crassostrea virginica (Gmelin)(the Eastern Oyster)
R Smolowitz - Veterinary Pathology Online, 2013
Abstract The eastern oyster, Crassostrea virginica (Gmelin), is both an important component
of our estuaries and an important farmed food animal along the east and south coasts of the
United States. Its populations have been significantly diminished in the wild due to …
of our estuaries and an important farmed food animal along the east and south coasts of the
United States. Its populations have been significantly diminished in the wild due to …
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Chicken erythrocytes respond to Toll-like receptor ligands by up-regulating cytokine transcripts
M St Paul, S Paolucci, N Barjesteh, RD Wood, S Sharif - Research in Veterinary …, 2013
Abstract Avian erythrocytes are nucleated cells of myeloid origin that are able to actively
transcribe and translate proteins. Although their role in gas exchange and transportation has
been well described, it has recently been shown that chicken erythrocytes produce …
transcribe and translate proteins. Although their role in gas exchange and transportation has
been well described, it has recently been shown that chicken erythrocytes produce …
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Molecular genetic bases of adaptation processes and approaches to their analysis
EA Salmenkova - Russian journal of genetics, 2013
Résumé/Abstract Great interest in studying the molecular genetic bases of the adaptation
processes is explained by their importance in understanding evolutionary changes, in the
development of intraspecific and interspecific genetic diversity, and in the creation of …
processes is explained by their importance in understanding evolutionary changes, in the
development of intraspecific and interspecific genetic diversity, and in the creation of …
Genomic patterns of introgression in rainbow and westslope cutthroat trout illuminated by overlapping pairedâend RAD sequencing
PA Hohenlohe, MD Day, SJ Amish, MR Miller… - Molecular Ecology, 2013
Abstract Rapid and inexpensive methods for genomewide single nucleotide polymorphism
(SNP) discovery and genotyping are urgently needed for population management and
conservation. In hybridized populations, genomic techniques that can identify and …
(SNP) discovery and genotyping are urgently needed for population management and
conservation. In hybridized populations, genomic techniques that can identify and …
Special Issue Oceans and Humans Health: The Ecology of Marine Opportunists
CA Burge, CJS Kim, JM Lyles, CD Harvell - Microbial Ecology, 2013
Abstract Opportunistic marine pathogens, like opportunistic terrestrial pathogens, are
ubiquitous in the environment (waters, sediments, and organisms) and only cause disease
in immune-compromised or stressed hosts. In this review, we discuss four hostâpathogen …
ubiquitous in the environment (waters, sediments, and organisms) and only cause disease
in immune-compromised or stressed hosts. In this review, we discuss four hostâpathogen …
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Effects of dietary lactosucrose on the gene transcript profile in liver of grass carp (Ctenopharyngodon idella)
WY Chu, XL Liu, DX Chen, J Shi, YH Chen, YL Li… - Aquaculture Nutrition, 2013
Abstract Grass carp (Ctenopharyngodon idella) is a valuable aquacultural species in China,
but it is highly vulnerable to infectious diseases, which consequently may cause tremendous
economical loss. To reduce the risk of disease in the fish, antibiotics have been used in …
but it is highly vulnerable to infectious diseases, which consequently may cause tremendous
economical loss. To reduce the risk of disease in the fish, antibiotics have been used in …
Allograft inflammatory factor-1 stimulates hemocyte immune activation by enhancing phagocytosis and expression of inflammatory cytokines in< i> Crassostrea gigas< …
Y Zhang, J Li, F Yu, X He, Z Yu - Fish & Shellfish Immunology, 2013
Abstract Allograft inflammatory factor-1 (AIF-1) is a calcium-binding cytokine associated with
immune cell activation and inflammatory response. Presently, we have identified and
characterized an AIF-1 in a marine bivalve mollusk, Crassostrea gigas, and designated it …
immune cell activation and inflammatory response. Presently, we have identified and
characterized an AIF-1 in a marine bivalve mollusk, Crassostrea gigas, and designated it …
[PDF] Statistical methods for analyzing human genetic variation in diverse populations
C Wang - 2012
The development of molecular-genetic technology has significantly contributed to the
expansion of genetic data sets for various types of DNA variation. Especially for humans, a
large number of genetic markers have been assayed in over thousands of individuals from …
expansion of genetic data sets for various types of DNA variation. Especially for humans, a
large number of genetic markers have been assayed in over thousands of individuals from …
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Short periods of fasting followed by refeeding change the expression of muscle growth-related genes in juvenile Nile tilapia (< i> Oreochromis niloticus</i>)
C Nebo, MC Portella, FR Carani, FLA de Almeida… - … and Physiology Part B: …, 2013
Abstract Muscle growth mechanisms are controlled by molecular pathways that can be
affected by fasting and refeeding. In this study, we hypothesized that short period of fasting
followed by refeeding would change the expression of muscle growth-related genes in …
affected by fasting and refeeding. In this study, we hypothesized that short period of fasting
followed by refeeding would change the expression of muscle growth-related genes in …
Integration of Vibrio vulnificus into Marine Aggregates and Its Subsequent Uptake by Crassostrea virginica Oysters
B Froelich, M Ayrapetyan, JD Oliver - Applied and Environmental Microbiology, 2013
ABSTRACT Marine aggregates are naturally forming conglomerations of larvacean houses,
phytoplankton, microbes, and inorganics adhered together by exocellular polymers. In this
study, we show in vitro that the bacterial pathogen Vibrio vulnificus can be concentrated …
phytoplankton, microbes, and inorganics adhered together by exocellular polymers. In this
study, we show in vitro that the bacterial pathogen Vibrio vulnificus can be concentrated …
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